Detailed information of SNP:
|
SNP ID:
sf0618925530(Gbrowse)
Chromosome: chr06 Position: 18925530 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 55.91% | 44.09% |
| All Indica | 730 | 42.19% | 57.81% |
| All Japonica | 497 | 69.42% | 30.58% |
| Aus | 65 | 93.85% | 6.15% |
| Indica I | 354 | 42.09% | 57.91% |
| Indica II | 180 | 36.11% | 63.89% |
| Indica Intermediate | 196 | 47.96% | 52.04% |
| Temperate Japonica | 335 | 58.51% | 41.49% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618925530 | C->T | LOC_Os06g32530(LOC_Os06g32530.1) | Synonymous |