Detailed information of SNP:
|
SNP ID:
sf0618964396(Gbrowse)
Chromosome: chr06 Position: 18964396 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1405 | 64.41% | 35.59% |
| All Indica | 795 | 87.55% | 12.45% |
| All Japonica | 489 | 29.24% | 70.76% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 372 | 83.33% | 16.67% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 210 | 86.67% | 13.33% |
| Temperate Japonica | 332 | 39.46% | 60.54% |
| Tropical Japonica | 90 | 1.11% | 98.89% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618964396 | G->A | INTERGENIC | None |