Detailed information of SNP:
|
SNP ID:
sf0618968961(Gbrowse)
Chromosome: chr06 Position: 18968961 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1410 | 50.64% | 49.36% |
| All Indica | 797 | 80.18% | 19.82% |
| All Japonica | 491 | 2.85% | 97.15% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 373 | 76.68% | 23.32% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 72.99% | 27.01% |
| Temperate Japonica | 329 | 3.95% | 96.05% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618968961 | C->T | INTERGENIC | None |