Detailed information of SNP:
|
SNP ID:
sf0618972257(Gbrowse)
Chromosome: chr06 Position: 18972257 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.89% | 3.11% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 496 | 94.15% | 5.85% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 94.33% | 5.67% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 86.57% | 13.43% |
| Group VI/Aromatic | 12 | 16.67% | 83.33% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618972257 | G->A | INTERGENIC | None |