Detailed information of SNP:
|
SNP ID:
sf0618977163(Gbrowse)
Chromosome: chr06 Position: 18977163 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1370 | 56.72% | 43.28% |
| All Indica | 794 | 79.72% | 20.28% |
| All Japonica | 464 | 20.47% | 79.53% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 371 | 77.09% | 22.91% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 210 | 72.38% | 27.62% |
| Temperate Japonica | 304 | 28.95% | 71.05% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 66 | 9.09% | 90.91% |
| Group VI/Aromatic | 5 | 0.00% | 100.00% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618977163 | G->C | LOC_Os06g32630(LOC_Os06g32630.1) | INTRON |