Detailed information of SNP:
|
SNP ID:
sf0618994625(Gbrowse)
Chromosome: chr06 Position: 18994625 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 52.37% | 47.63% |
| All Indica | 799 | 79.97% | 20.03% |
| All Japonica | 491 | 11.00% | 89.00% |
| Aus | 67 | 38.81% | 61.19% |
| Indica I | 375 | 76.27% | 23.73% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 73.46% | 26.54% |
| Temperate Japonica | 330 | 12.73% | 87.27% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 67 | 7.46% | 92.54% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618994625 | C->T | INTERGENIC | None |