Detailed information of SNP:
|
SNP ID:
sf0618994972(Gbrowse)
Chromosome: chr06 Position: 18994972 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 53.46% | 46.54% |
| All Indica | 791 | 29.20% | 70.80% |
| All Japonica | 490 | 90.00% | 10.00% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 370 | 31.08% | 68.92% |
| Indica II | 210 | 17.62% | 82.38% |
| Indica Intermediate | 211 | 37.44% | 62.56% |
| Temperate Japonica | 328 | 86.89% | 13.11% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 91.18% | 8.82% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618994972 | C->T | LOC_Os06g32660(LOC_Os06g32660.1) | Non-Synonymous SNP |