Detailed information of SNP:
|
SNP ID:
sf0618996820(Gbrowse)
Chromosome: chr06 Position: 18996820 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1368 | 55.34% | 44.66% |
| All Indica | 786 | 79.77% | 20.23% |
| All Japonica | 462 | 8.44% | 91.56% |
| Aus | 66 | 83.33% | 16.67% |
| Indica I | 368 | 74.73% | 25.27% |
| Indica II | 211 | 82.94% | 17.06% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 303 | 7.92% | 92.08% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 65 | 9.23% | 90.77% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 57.50% | 42.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0618996820 | T->C | LOC_Os06g32660(LOC_Os06g32660.1) | Non-Synonymous SNP |