Detailed information of SNP:
|
SNP ID:
sf0619057756(Gbrowse)
Chromosome: chr06 Position: 19057756 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1322 | 91.83% | 8.17% |
| All Indica | 728 | 89.97% | 10.03% |
| All Japonica | 486 | 96.50% | 3.50% |
| Aus | 57 | 85.96% | 14.04% |
| Indica I | 344 | 91.57% | 8.43% |
| Indica II | 193 | 86.53% | 13.47% |
| Indica Intermediate | 191 | 90.58% | 9.42% |
| Temperate Japonica | 324 | 95.99% | 4.01% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 11 | 27.27% | 72.73% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619057756 | C->T | INTERGENIC | None |