Detailed information of SNP:
|
SNP ID:
sf0619099976(Gbrowse)
Chromosome: chr06 Position: 19099976 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 67.51% | 32.49% |
| All Indica | 799 | 89.11% | 10.89% |
| All Japonica | 495 | 31.31% | 68.69% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 94.93% | 5.07% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 74.41% | 25.59% |
| Temperate Japonica | 333 | 42.04% | 57.96% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619099976 | C->T | INTERGENIC | None |