Detailed information of SNP:
|
SNP ID:
sf0619100819(Gbrowse)
Chromosome: chr06 Position: 19100819 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1369 | 94.96% | 5.04% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 449 | 84.63% | 15.37% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 302 | 80.13% | 19.87% |
| Tropical Japonica | 86 | 97.67% | 2.33% |
| Japonica Intermediate | 61 | 88.52% | 11.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619100819 | A->G | LOC_Os06g32860(LOC_Os06g32860.1) | Synonymous |
| sf0619100819 | A->G | LOC_Os06g32860(LOC_Os06g32860.2) | Synonymous |