Detailed information of SNP:
|
SNP ID:
sf0619102680(Gbrowse)
Chromosome: chr06 Position: 19102680 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 61.66% | 38.34% |
| All Indica | 796 | 80.28% | 19.72% |
| All Japonica | 492 | 29.67% | 70.33% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 372 | 77.96% | 22.04% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 330 | 40.30% | 59.70% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619102680 | A->G | LOC_Os06g32860(LOC_Os06g32860.1) | INTRON |
| sf0619102680 | A->G | LOC_Os06g32860(LOC_Os06g32860.2) | INTRON |