Detailed information of SNP:
|
SNP ID:
sf0619130739(Gbrowse)
Chromosome: chr06 Position: 19130739 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1409 | 95.95% | 4.05% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 489 | 97.34% | 2.66% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 95.47% | 4.53% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 333 | 97.00% | 3.00% |
| Tropical Japonica | 89 | 98.88% | 1.12% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 13 | 38.46% | 61.54% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619130739 | T->C | INTERGENIC | None |