Detailed information of SNP:
|
SNP ID:
sf0619134530(Gbrowse)
Chromosome: chr06 Position: 19134530 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1366 | 50.88% | 49.12% |
| All Indica | 758 | 85.62% | 14.38% |
| All Japonica | 497 | 1.21% | 98.79% |
| Aus | 58 | 29.31% | 70.69% |
| Indica I | 353 | 89.24% | 10.76% |
| Indica II | 204 | 84.80% | 15.20% |
| Indica Intermediate | 201 | 80.10% | 19.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 13 | 7.69% | 92.31% |
| Intermediate | 40 | 55.00% | 45.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619134530 | T->C | INTERGENIC | None |