Detailed information of SNP:
|
SNP ID:
sf0619152240(Gbrowse)
Chromosome: chr06 Position: 19152240 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1399 | 70.19% | 29.81% |
| All Indica | 797 | 97.49% | 2.51% |
| All Japonica | 479 | 19.83% | 80.17% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 317 | 23.34% | 76.66% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 14.71% | 85.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619152240 | A->T | LOC_Os06g32900(LOC_Os06g32900.1) | INTRON |