Detailed information of SNP:
|
SNP ID:
sf0619152688(Gbrowse)
Chromosome: chr06 Position: 19152688 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 96.75% | 3.25% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 493 | 93.71% | 6.29% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.59% | 1.41% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 331 | 91.54% | 8.46% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619152688 | C->A | LOC_Os06g32900(LOC_Os06g32900.1) | INTRON |