Detailed information of SNP:
|
SNP ID:
sf0619154354(Gbrowse)
Chromosome: chr06 Position: 19154354 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1399 | 55.61% | 44.39% |
| All Indica | 798 | 78.82% | 21.18% |
| All Japonica | 479 | 21.09% | 78.91% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 374 | 78.07% | 21.93% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 65.88% | 34.12% |
| Temperate Japonica | 317 | 28.39% | 71.61% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619154354 | G->A | LOC_Os06g32900(LOC_Os06g32900.1) | Non-Synonymous SNP |