Detailed information of SNP:
|
SNP ID:
sf0619154364(Gbrowse)
Chromosome: chr06 Position: 19154364 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1387 | 63.16% | 36.84% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 465 | 24.95% | 75.05% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 305 | 34.43% | 65.57% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619154364 | G->C | LOC_Os06g32900(LOC_Os06g32900.1) | Non-Synonymous SNP |