Detailed information of SNP:
|
SNP ID:
sf0619156350(Gbrowse)
Chromosome: chr06 Position: 19156350 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 62.17% | 37.83% |
| All Indica | 798 | 88.35% | 11.65% |
| All Japonica | 472 | 23.09% | 76.91% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 374 | 95.19% | 4.81% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 311 | 31.51% | 68.49% |
| Tropical Japonica | 93 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619156350 | G->A | LOC_Os06g32910(LOC_Os06g32910.1) | Non-Synonymous SNP |