Detailed information of SNP:
|
SNP ID:
sf0619159803(Gbrowse)
Chromosome: chr06 Position: 19159803 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 64.41% | 35.59% |
| All Indica | 799 | 88.36% | 11.64% |
| All Japonica | 495 | 31.31% | 68.69% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 71.09% | 28.91% |
| Temperate Japonica | 333 | 42.64% | 57.36% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 58.54% | 41.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619159803 | C->T | LOC_Os06g32920(LOC_Os06g32920.1) | Non-Synonymous SNP |