Detailed information of SNP:
|
SNP ID:
sf0619162389(Gbrowse)
Chromosome: chr06 Position: 19162389 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1356 | 74.71% | 25.29% |
| All Indica | 744 | 55.11% | 44.89% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 350 | 52.57% | 47.43% |
| Indica II | 198 | 45.45% | 54.55% |
| Indica Intermediate | 196 | 69.39% | 30.61% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 78.95% | 21.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619162389 | C->A | INTERGENIC | None |