Detailed information of SNP:
|
SNP ID:
sf0619175473(Gbrowse)
Chromosome: chr06 Position: 19175473 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 72.16% | 27.84% |
| All Indica | 797 | 94.73% | 5.27% |
| All Japonica | 481 | 30.77% | 69.23% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 373 | 100.00% | 0.00% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 83.89% | 16.11% |
| Temperate Japonica | 321 | 39.88% | 60.12% |
| Tropical Japonica | 93 | 7.53% | 92.47% |
| Japonica Intermediate | 67 | 19.40% | 80.60% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619175473 | A->G | INTERGENIC | None |