Detailed information of SNP:
|
SNP ID:
sf0619192489(Gbrowse)
Chromosome: chr06 Position: 19192489 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 94.31% | 5.69% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 496 | 99.80% | 0.20% |
| Aus | 56 | 89.29% | 10.71% |
| Indica I | 375 | 82.93% | 17.07% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 98.92% | 1.08% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619192489 | C->T | INTERGENIC | None |