Detailed information of SNP:
|
SNP ID:
sf0619228696(Gbrowse)
Chromosome: chr06 Position: 19228696 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 50.21% | 49.79% |
| All Indica | 799 | 22.40% | 77.60% |
| All Japonica | 490 | 92.65% | 7.35% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 23.73% | 76.27% |
| Indica II | 213 | 7.51% | 92.49% |
| Indica Intermediate | 211 | 35.07% | 64.93% |
| Temperate Japonica | 329 | 89.97% | 10.03% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 95.52% | 4.48% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 45.24% | 54.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619228696 | G->A | LOC_Os06g33030(LOC_Os06g33030.1) | INTRON |