Detailed information of SNP:
|
SNP ID:
sf0619240798(Gbrowse)
Chromosome: chr06 Position: 19240798 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 57.23% | 42.77% |
| All Indica | 795 | 77.36% | 22.64% |
| All Japonica | 492 | 29.07% | 70.93% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 373 | 76.68% | 23.32% |
| Indica II | 212 | 91.98% | 8.02% |
| Indica Intermediate | 210 | 63.81% | 36.19% |
| Temperate Japonica | 331 | 39.58% | 60.42% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 67 | 16.42% | 83.58% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619240798 | C->T | INTERGENIC | None |