Detailed information of SNP:
|
SNP ID:
sf0619253769(Gbrowse)
Chromosome: chr06 Position: 19253769 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 65.50% | 34.50% |
| All Indica | 795 | 89.81% | 10.19% |
| All Japonica | 487 | 21.15% | 78.85% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 80.86% | 19.14% |
| Temperate Japonica | 327 | 26.30% | 73.70% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 16.18% | 83.82% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619253769 | A->G | LOC_Os06g33070(LOC_Os06g33070.1) | Synonymous |