Detailed information of SNP:
|
SNP ID:
sf0619256214(Gbrowse)
Chromosome: chr06 Position: 19256214 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 64.42% | 35.58% |
| All Indica | 798 | 96.49% | 3.51% |
| All Japonica | 476 | 4.62% | 95.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.86% | 2.14% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 317 | 3.47% | 96.53% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 65 | 3.08% | 96.92% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619256214 | T->C | LOC_Os06g33070(LOC_Os06g33070.1) | INTRON |