Detailed information of SNP:
|
SNP ID:
sf0619258272(Gbrowse)
Chromosome: chr06 Position: 19258272 |
Major allele:
G
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1412 | 53.26% | 46.74% |
| All Indica | 793 | 87.14% | 12.86% |
| All Japonica | 496 | 2.42% | 97.58% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 372 | 93.55% | 6.45% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 208 | 69.23% | 30.77% |
| Temperate Japonica | 334 | 3.29% | 96.71% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619258272 | C->G | LOC_Os06g33080(LOC_Os06g33080.1) | Non-Synonymous SNP |