Detailed information of SNP:
|
SNP ID:
sf0619270872(Gbrowse)
Chromosome: chr06 Position: 19270872 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 98.08% | 1.92% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 481 | 97.71% | 2.29% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 96.59% | 3.41% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619270872 | G->T | LOC_Os06g33100(LOC_Os06g33100.1) | Non-Synonymous SNP |