Detailed information of SNP:
|
SNP ID:
sf0619280483(Gbrowse)
Chromosome: chr06 Position: 19280483 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.26% | 13.74% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 68.21% | 31.79% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 87.68% | 12.32% |
| Temperate Japonica | 335 | 56.72% | 43.28% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619280483 | C->T | LOC_Os06g33120(LOC_Os06g33120.1) | Non-Synonymous SNP |