Detailed information of SNP:
|
SNP ID:
sf0619286100(Gbrowse)
Chromosome: chr06 Position: 19286100 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 60.82% | 39.18% |
| All Indica | 799 | 79.22% | 20.78% |
| All Japonica | 494 | 33.20% | 66.80% |
| Aus | 65 | 35.38% | 64.62% |
| Indica I | 375 | 78.67% | 21.33% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 65.40% | 34.60% |
| Temperate Japonica | 335 | 44.18% | 55.82% |
| Tropical Japonica | 91 | 2.20% | 97.80% |
| Japonica Intermediate | 68 | 20.59% | 79.41% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619286100 | C->T | INTERGENIC | None |