Detailed information of SNP:
|
SNP ID:
sf0619309653(Gbrowse)
Chromosome: chr06 Position: 19309653 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.44% | 39.56% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 44.78% | 55.22% |
| Indica I | 375 | 98.13% | 1.87% |
| Indica II | 212 | 96.23% | 3.77% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 61.90% | 38.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619309653 | G->A | INTERGENIC | None |