Detailed information of SNP:
|
SNP ID:
sf0619330739(Gbrowse)
Chromosome: chr06 Position: 19330739 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 73.77% | 26.23% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 497 | 66.80% | 33.20% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 374 | 77.27% | 22.73% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 78.67% | 21.33% |
| Temperate Japonica | 335 | 56.12% | 43.88% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619330739 | T->G | INTERGENIC | None |