Detailed information of SNP:
|
SNP ID:
sf0619380861(Gbrowse)
Chromosome: chr06 Position: 19380861 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 91.77% | 8.23% |
| All Indica | 789 | 91.89% | 8.11% |
| All Japonica | 497 | 98.39% | 1.61% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 368 | 86.96% | 13.04% |
| Indica II | 212 | 97.17% | 2.83% |
| Indica Intermediate | 209 | 95.22% | 4.78% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619380861 | C->T | LOC_Os06g33290(LOC_Os06g33290.1) | Synonymous |