Detailed information of SNP:
|
SNP ID:
sf0619395047(Gbrowse)
Chromosome: chr06 Position: 19395047 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.70% | 20.30% |
| All Indica | 799 | 84.86% | 15.14% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 81.60% | 18.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 79.62% | 20.38% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619395047 | T->G | INTERGENIC | None |