Detailed information of SNP:
|
SNP ID:
sf0619396287(Gbrowse)
Chromosome: chr06 Position: 19396287 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 79.77% | 20.23% |
| All Indica | 799 | 85.11% | 14.89% |
| All Japonica | 497 | 68.01% | 31.99% |
| Aus | 67 | 89.55% | 10.45% |
| Indica I | 375 | 82.13% | 17.87% |
| Indica II | 213 | 95.31% | 4.69% |
| Indica Intermediate | 211 | 80.09% | 19.91% |
| Temperate Japonica | 335 | 56.42% | 43.58% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619396287 | G->A | INTERGENIC | None |