Detailed information of SNP:
|
SNP ID:
sf0619429741(Gbrowse)
Chromosome: chr06 Position: 19429741 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1414 | 53.32% | 46.68% |
| All Indica | 797 | 23.34% | 76.66% |
| All Japonica | 495 | 98.59% | 1.41% |
| Aus | 67 | 71.64% | 28.36% |
| Indica I | 373 | 22.79% | 77.21% |
| Indica II | 213 | 10.80% | 89.20% |
| Indica Intermediate | 211 | 36.97% | 63.03% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619429741 | C->G | LOC_Os06g33350(LOC_Os06g33350.1) | INTRON |