Detailed information of SNP:
|
SNP ID:
sf0619431380(Gbrowse)
Chromosome: chr06 Position: 19431380 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1404 | 52.56% | 47.44% |
| All Indica | 797 | 22.96% | 77.04% |
| All Japonica | 485 | 97.53% | 2.47% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 374 | 22.73% | 77.27% |
| Indica II | 213 | 10.33% | 89.67% |
| Indica Intermediate | 210 | 36.19% | 63.81% |
| Temperate Japonica | 324 | 98.15% | 1.85% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 13 | 92.31% | 7.69% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619431380 | A->G | INTERGENIC | None |