Detailed information of SNP:
|
SNP ID:
sf0619440064(Gbrowse)
Chromosome: chr06 Position: 19440064 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1403 | 64.58% | 35.42% |
| All Indica | 799 | 97.50% | 2.50% |
| All Japonica | 481 | 3.12% | 96.88% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 327 | 1.22% | 98.78% |
| Tropical Japonica | 88 | 10.23% | 89.77% |
| Japonica Intermediate | 66 | 3.03% | 96.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619440064 | A->C | LOC_Os06g33370(LOC_Os06g33370.1) | Non-Synonymous SNP |