Detailed information of SNP:
|
SNP ID:
sf0619444569(Gbrowse)
Chromosome: chr06 Position: 19444569 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1408 | 90.27% | 9.73% |
| All Indica | 798 | 83.71% | 16.29% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 374 | 79.14% | 20.86% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 7 | 71.43% | 28.57% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619444569 | C->T | LOC_Os06g33390(LOC_Os06g33390.1) | UTR_3_PRIME |