Detailed information of SNP:
|
SNP ID:
sf0619488525(Gbrowse)
Chromosome: chr06 Position: 19488525 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 53.10% | 46.90% |
| All Indica | 798 | 89.85% | 10.15% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 4.48% | 95.52% |
| Indica I | 374 | 92.78% | 7.22% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619488525 | A->T | INTERGENIC | None |