Detailed information of SNP:
|
SNP ID:
sf0619497877(Gbrowse)
Chromosome: chr06 Position: 19497877 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1338 | 89.61% | 10.39% |
| All Indica | 723 | 82.16% | 17.84% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 334 | 94.61% | 5.39% |
| Indica II | 198 | 69.19% | 30.81% |
| Indica Intermediate | 191 | 73.82% | 26.18% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 73.68% | 26.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619497877 | T->C | INTERGENIC | None |