Detailed information of SNP:
|
SNP ID:
sf0619509254(Gbrowse)
Chromosome: chr06 Position: 19509254 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1312 | 97.64% | 2.36% |
| All Indica | 696 | 96.26% | 3.74% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 323 | 97.52% | 2.48% |
| Indica II | 185 | 94.59% | 5.41% |
| Indica Intermediate | 188 | 95.74% | 4.26% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 38 | 89.47% | 10.53% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619509254 | G->A | LOC_Os06g33490(LOC_Os06g33490.1) | INTRON |