Detailed information of SNP:
|
SNP ID:
sf0619514680(Gbrowse)
Chromosome: chr06 Position: 19514680 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 61.50% | 38.50% |
| All Indica | 798 | 96.99% | 3.01% |
| All Japonica | 493 | 1.01% | 98.99% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 374 | 97.06% | 2.94% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 90 | 2.22% | 97.78% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619514680 | G->A | INTERGENIC | None |