Detailed information of SNP:



SNP ID: sf0619609066(Gbrowse)

Chromosome: chr06

Position: 19609066
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1419 89.29% 10.71%
All Indica799 98.50% 1.50%
All Japonica497 73.24% 26.76%
Aus67 95.52% 4.48%
Indica I375 98.67% 1.33%
Indica II213 98.59% 1.41%
Indica Intermediate211 98.10% 1.90%
Temperate Japonica335 68.66% 31.34%
Tropical Japonica94 82.98% 17.02%
Japonica Intermediate68 82.35% 17.65%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 90.48% 9.52%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0619609066 C->T INTERGENIC None