Detailed information of SNP:
|
SNP ID:
sf0619609107(Gbrowse)
Chromosome: chr06 Position: 19609107 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1332 | 76.58% | 23.42% |
| All Indica | 714 | 57.98% | 42.02% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 330 | 53.94% | 46.06% |
| Indica II | 182 | 48.35% | 51.65% |
| Indica Intermediate | 202 | 73.27% | 26.73% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619609107 | C->T | INTERGENIC | None |