Detailed information of SNP:
|
SNP ID:
sf0619617495(Gbrowse)
Chromosome: chr06 Position: 19617495 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1417 | 63.66% | 36.34% |
| All Indica | 798 | 97.24% | 2.76% |
| All Japonica | 497 | 2.62% | 97.38% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 97.33% | 2.67% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 8.51% | 91.49% |
| Japonica Intermediate | 68 | 2.94% | 97.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 78.05% | 21.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619617495 | C->T | LOC_Os06g33710(LOC_Os06g33710.3) | INTRON |
| sf0619617495 | C->T | LOC_Os06g33710(LOC_Os06g33710.2) | INTRON |
| sf0619617495 | C->T | LOC_Os06g33710(LOC_Os06g33710.4) | INTRON |
| sf0619617495 | C->T | LOC_Os06g33710(LOC_Os06g33710.1) | INTRON |