Detailed information of SNP:
|
SNP ID:
sf0619620984(Gbrowse)
Chromosome: chr06 Position: 19620984 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1403 | 72.70% | 27.30% |
| All Indica | 783 | 52.87% | 47.13% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 49.73% | 50.27% |
| Indica II | 209 | 41.63% | 58.37% |
| Indica Intermediate | 206 | 69.90% | 30.10% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619620984 | G->T | INTERGENIC | None |