Detailed information of SNP:
|
SNP ID:
sf0619638211(Gbrowse)
Chromosome: chr06 Position: 19638211 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1407 | 56.29% | 43.71% |
| All Indica | 790 | 85.82% | 14.18% |
| All Japonica | 497 | 2.41% | 97.59% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 367 | 81.47% | 18.53% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 210 | 85.71% | 14.29% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 12 | 83.33% | 16.67% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619638211 | G->A | LOC_Os06g33750(LOC_Os06g33750.1) | Synonymous |