Detailed information of SNP:
|
SNP ID:
sf0619640713(Gbrowse)
Chromosome: chr06 Position: 19640713 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1409 | 59.33% | 40.67% |
| All Indica | 795 | 92.08% | 7.92% |
| All Japonica | 494 | 5.26% | 94.74% |
| Aus | 64 | 89.06% | 10.94% |
| Indica I | 373 | 96.78% | 3.22% |
| Indica II | 212 | 85.85% | 14.15% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 334 | 5.09% | 94.91% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0619640713 | A->G | LOC_Os06g33750(LOC_Os06g33750.1) | Synonymous |